Published April 13, 2025 | Version v1
Dataset Open

Figure data for Publication Trenzinger et al. in Lab Chip 2024

Description

Description of dataset

This dataset includes all necessary information to reproduce the figures from the publication "Microdevice for confinement of T-cells on functionalized bio-interface".

Article: Microdevice for confinement of T-cells on functionalized bio-interfaces

Authors

* Corresponding authors
a Institute of Applied Physics, TU Wien, Wiedner Hauptstraße 8-10, 1040 Vienna, Austria

Contact

E-mail: ctrenzinger@hotmail.com, brameshuber@iap.tuwien.ac.at

Technical details

Reproduction of the figures

  • Python: for all figures generated with Python, the corresponding Jupyter Notebook file is provided. The _readme.txt contains information about the files in the corresponding folder, requirements.txt contains information about the Python version and dependencies.
  • Matlab: the scripts to analyse data and to generate figures is provided in the corresponding folders. notes.txt files contain remarks for the analysis. All numerical data for analysis with Matlab is provided in CSV format.

Required Software

  • Matlab (Mathworks), tested with version 2019b
  • Cellprofiler (4.2.1), https://cellprofiler.org
  • Python (version 3.10), depencies are listed in the file requirements.txt

Licenses

Data is licensed under the Creative Commons Attribution 4.0 International
Software is licensed under the MIT license

Further notes

The .cpproj files are CellProfilerProject files, containing data in HDF5 format.
The .czi files are Carl Zeiss Imaging formats, and can be read e.g.with the bio-formats plugin for ImageJ/Fiji.

Abstract (English)

Mechanical stimuli are an integral part of the natural cellular microenvironment, influencing cell growth, differentiation, and survival, particularly in mechanically challenging environments like tumors. These stimuli are also crucial in the T-cell microenvironment, where they play a role in antigen recognition and pathogen detection. To study T-cell mechanobiology effectively, in vitro methods must replicate these mechanical stimuli induced by compression, tension or shear flow, in the presence of antigen-presenting cells (APCs). While custom-made microdevices and microfluidic chips have successfully observed bulk cell behavior under mechanical strain, no existing device fully replicated the T-cell mechanoenvironment comprehensively. In this study, we developed a microdevice that integrates the mechanoenvironmental aspects of an APC mimicry with compression under live-cell imaging conditions. This device allows for precise confinement of cells between two glass surfaces, which can be individually coated with functional bio-interfaces. The microdevice is reusable and enables presetting of confinement heights, manual seeding of cells and the assembly of components directly at the microscope. To validate our microdevice we confined primary mouse T-cells on different APC-mimicking supported lipid bilayers while monitoring their morphology and migratory behaviour over time. To study the effect of confinement on TCR signalling, we tracked intracellular calcium levels and quantified Erk1/2 phosphorylation by immunostaining. We observed that T-cell morphology and motility are affected by confinement but also by bilayer composition. Moreover our findings suggest that confinement, despite not interfering with T-cell activation, might increase TCR background signalling in resting T-cells. Importantly, our microdevice is not limited to T-cell research; it can also serve as a platform for studying mechanical stimulation in other cell types, cell aggregates like spheroids and organoids, or even tissue samples in the presence of various bio-interfaces.

Files

Fig. 1 + 2.zip

Files (197.7 MiB)

Name Size
md5:955be7669bc3ecb9258673cc862fb3ec
4.7 MiB Preview Download
md5:58ff46620c3a57308bff7b50fa6c2afd
331.2 KiB Preview Download
md5:521ac1c667e48275f8fff653749b85fd
34.2 MiB Preview Download
md5:3ebd312fafb715fd512b8d8a1d20389b
23.4 MiB Preview Download
md5:6872203250b896f52276c02a0754fd7d
10.8 MiB Preview Download
md5:0a1a136623c848f17483c05c1bfa9ed8
50.6 MiB Preview Download
md5:05a833aa18c00460dbb9f4d27ccd1e26
73.6 MiB Preview Download

Additional details

Related works

Is part of
Publication: 10.1039/D5LC00248F (DOI)

Funding

Joint Project I4662-B
FWF Austrian Science Fund
Joint Project I4740-B
FWF Austrian Science Fund
Weave Project Trilateral I6611-B
FWF Austrian Science Fund
Marie Skłodowska-Curie Grant Agreement 721358
European Commission

Dates

Accepted
2025-04-13
Publication accepted