Python Requirements and used Software Packages For calculating the single molecule localisations: Python 3.11.5 with the following Python packages: # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge alsa-lib 1.2.10 hd590300_0 conda-forge anyio 4.0.0 pyhd8ed1ab_0 conda-forge aom 3.5.0 h27087fc_0 conda-forge aotools 1.0.7 py_0 aotools archspec 0.2.3 pyhd8ed1ab_0 conda-forge argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py311h459d7ec_4 conda-forge arrow 1.2.3 pyhd8ed1ab_0 conda-forge asteval 0.9.31 pyhd8ed1ab_0 conda-forge asttokens 2.4.0 pyhd8ed1ab_0 conda-forge async-lru 2.0.4 pyhd8ed1ab_0 conda-forge attr 2.5.1 h166bdaf_1 conda-forge attrs 23.1.0 pyh71513ae_1 conda-forge babel 2.12.1 pyhd8ed1ab_1 conda-forge backcall 0.2.0 pyh9f0ad1d_0 conda-forge backports 1.0 pyhd8ed1ab_3 conda-forge backports.functools_lru_cache 1.6.5 pyhd8ed1ab_0 conda-forge beautifulsoup4 4.12.2 pyha770c72_0 conda-forge bleach 6.0.0 pyhd8ed1ab_0 conda-forge blinker 1.8.2 pypi_0 pypi blosc 1.21.5 h0f2a231_0 conda-forge boltons 23.0.0 pyhd8ed1ab_0 conda-forge brotli 1.1.0 hd590300_0 conda-forge brotli-bin 1.1.0 hd590300_0 conda-forge brotli-python 1.1.0 py311hb755f60_0 conda-forge brunsli 0.1 h9c3ff4c_0 conda-forge bspline 0.1.1 pyhd8ed1ab_0 conda-forge bzip2 1.0.8 h7f98852_4 conda-forge c-ares 1.19.1 hd590300_0 conda-forge c-blosc2 2.10.2 hb4ffafa_0 conda-forge ca-certificates 2025.1.31 hbcca054_0 conda-forge cached-property 1.5.2 hd8ed1ab_1 conda-forge cached_property 1.5.2 pyha770c72_1 conda-forge cairo 1.16.0 h0c91306_1017 conda-forge certifi 2025.1.31 pyhd8ed1ab_0 conda-forge cffi 1.15.1 py311hb3a22ac_5 conda-forge charls 2.4.2 h59595ed_0 conda-forge charset-normalizer 3.2.0 pyhd8ed1ab_0 conda-forge click 8.1.7 pypi_0 pypi colorama 0.4.6 pyhd8ed1ab_0 conda-forge comm 0.1.4 pyhd8ed1ab_0 conda-forge conda 23.9.0 py311h38be061_2 conda-forge conda-content-trust 0.2.0 pyhd8ed1ab_0 conda-forge conda-libmamba-solver 23.7.0 pyhd8ed1ab_0 conda-forge conda-package-handling 2.2.0 pyh38be061_0 conda-forge conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge contourpy 1.1.1 py311h9547e67_1 conda-forge cryptography 41.0.4 py311h63ff55d_0 conda-forge cuda-version 11.8 h70ddcb2_3 conda-forge cudatoolkit 11.8.0 h4ba93d1_13 conda-forge cupy 13.1.0 py311h878bca4_4 conda-forge cupy-core 13.1.0 py311h7bf26e7_4 conda-forge cycler 0.11.0 pyhd8ed1ab_0 conda-forge dash 2.17.1 pypi_0 pypi dash-core-components 2.0.0 pypi_0 pypi dash-html-components 2.0.0 pypi_0 pypi dash-table 5.0.0 pypi_0 pypi dav1d 1.2.1 hd590300_0 conda-forge dbus 1.13.6 h5008d03_3 conda-forge dcimg 0.6.0.post1 pypi_0 pypi debugpy 1.8.0 py311hb755f60_1 conda-forge decorator 5.1.1 pyhd8ed1ab_0 conda-forge defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge entrypoints 0.4 pyhd8ed1ab_0 conda-forge exceptiongroup 1.1.3 pyhd8ed1ab_0 conda-forge executing 1.2.0 pyhd8ed1ab_0 conda-forge expat 2.5.0 hcb278e6_1 conda-forge fastrlock 0.8.2 py311hb755f60_2 conda-forge ffmpeg 6.0.0 gpl_h14e97fc_104 conda-forge flask 3.0.3 pypi_0 pypi fmt 10.1.1 h00ab1b0_0 conda-forge font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge font-ttf-inconsolata 3.000 h77eed37_0 conda-forge font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge font-ttf-ubuntu 0.83 hab24e00_0 conda-forge fontconfig 2.14.2 h14ed4e7_0 conda-forge fonts-conda-ecosystem 1 0 conda-forge fonts-conda-forge 1 0 conda-forge fonttools 4.42.1 py311h459d7ec_0 conda-forge fqdn 1.5.1 pyhd8ed1ab_0 conda-forge freeglut 3.2.2 hac7e632_2 conda-forge freetype 2.12.1 h267a509_2 conda-forge fribidi 1.0.10 h36c2ea0_0 conda-forge future 0.18.3 pyhd8ed1ab_0 conda-forge gettext 0.21.1 h27087fc_0 conda-forge giflib 5.2.1 h0b41bf4_3 conda-forge glib 2.78.0 hfc55251_0 conda-forge glib-tools 2.78.0 hfc55251_0 conda-forge gmp 6.2.1 h58526e2_0 conda-forge gnutls 3.7.8 hf3e180e_0 conda-forge graphite2 1.3.13 h58526e2_1001 conda-forge gst-plugins-base 1.22.6 h8e1006c_1 conda-forge gstreamer 1.22.6 h98fc4e7_1 conda-forge h5py 3.9.0 nompi_py311h3839ddf_103 conda-forge harfbuzz 8.2.1 h3d44ed6_0 conda-forge hdf5 1.14.2 nompi_h4f84152_100 conda-forge icu 73.2 h59595ed_0 conda-forge idna 3.4 pyhd8ed1ab_0 conda-forge imagecodecs 2023.9.18 py311h9b38416_0 conda-forge imageio 2.31.1 pyh24c5eb1_0 conda-forge importlib-metadata 6.8.0 pyha770c72_0 conda-forge importlib_metadata 6.8.0 hd8ed1ab_0 conda-forge importlib_resources 6.1.0 pyhd8ed1ab_0 conda-forge ipykernel 6.25.2 pyh2140261_0 conda-forge ipympl 0.9.3 pyhd8ed1ab_0 conda-forge ipython 8.15.0 pyh0d859eb_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge ipywidgets 8.1.1 pyhd8ed1ab_0 conda-forge isoduration 20.11.0 pyhd8ed1ab_0 conda-forge itsdangerous 2.2.0 pypi_0 pypi jasper 4.0.0 h32699f2_1 conda-forge jax 0.4.16 pypi_0 pypi jaxlib 0.4.16+cuda12.cudnn89 pypi_0 pypi jedi 0.19.0 pyhd8ed1ab_0 conda-forge jinja2 3.1.2 pyhd8ed1ab_1 conda-forge joblib 1.3.2 pyhd8ed1ab_0 conda-forge json5 0.9.14 pyhd8ed1ab_0 conda-forge jsonpatch 1.33 pyhd8ed1ab_0 conda-forge jsonpointer 2.4 py311h38be061_3 conda-forge jsonschema 4.19.1 pyhd8ed1ab_0 conda-forge jsonschema-specifications 2023.7.1 pyhd8ed1ab_0 conda-forge jsonschema-with-format-nongpl 4.19.1 pyhd8ed1ab_0 conda-forge jupyter-lsp 2.2.0 pyhd8ed1ab_0 conda-forge jupyter_client 8.3.1 pyhd8ed1ab_0 conda-forge jupyter_core 5.3.2 py311h38be061_0 conda-forge jupyter_events 0.7.0 pyhd8ed1ab_2 conda-forge jupyter_server 2.7.3 pyhd8ed1ab_1 conda-forge jupyter_server_terminals 0.4.4 pyhd8ed1ab_1 conda-forge jupyterlab 4.0.6 pyhd8ed1ab_0 conda-forge jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge jupyterlab_server 2.25.0 pyhd8ed1ab_0 conda-forge jupyterlab_widgets 3.0.9 pyhd8ed1ab_0 conda-forge jxrlib 1.1 h7f98852_2 conda-forge keyutils 1.6.1 h166bdaf_0 conda-forge kiwisolver 1.4.5 py311h9547e67_1 conda-forge krb5 1.21.2 h659d440_0 conda-forge lame 3.100 h166bdaf_1003 conda-forge lazy_loader 0.3 pyhd8ed1ab_0 conda-forge lcms2 2.15 h7f713cb_2 conda-forge ld_impl_linux-64 2.40 h41732ed_0 conda-forge lerc 4.0.0 h27087fc_0 conda-forge libabseil 20230802.1 cxx17_h59595ed_0 conda-forge libaec 1.0.6 hcb278e6_1 conda-forge libarchive 3.6.2 h039dbb9_1 conda-forge libass 0.17.1 h8fe9dca_1 conda-forge libavif16 1.0.1 h014f275_1 conda-forge libblas 3.9.0 18_linux64_openblas conda-forge libbrotlicommon 1.1.0 hd590300_0 conda-forge libbrotlidec 1.1.0 hd590300_0 conda-forge libbrotlienc 1.1.0 hd590300_0 conda-forge libcap 2.69 h0f662aa_0 conda-forge libcblas 3.9.0 18_linux64_openblas conda-forge libclang 15.0.7 default_h7634d5b_3 conda-forge libclang13 15.0.7 default_h9986a30_3 conda-forge libcups 2.3.3 h4637d8d_4 conda-forge libcurl 8.3.0 hca28451_0 conda-forge libdeflate 1.19 hd590300_0 conda-forge libdrm 2.4.114 h166bdaf_0 conda-forge libedit 3.1.20191231 he28a2e2_2 conda-forge libev 4.33 h516909a_1 conda-forge libevent 2.1.12 hf998b51_1 conda-forge libexpat 2.5.0 hcb278e6_1 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libflac 1.4.3 h59595ed_0 conda-forge libgcc-ng 13.2.0 h807b86a_2 conda-forge libgcrypt 1.10.1 h166bdaf_0 conda-forge libgfortran-ng 13.2.0 h69a702a_2 conda-forge libgfortran5 13.2.0 ha4646dd_2 conda-forge libglib 2.78.0 hebfc3b9_0 conda-forge libglu 9.0.0 hac7e632_1003 conda-forge libgomp 13.2.0 h807b86a_2 conda-forge libgpg-error 1.47 h71f35ed_0 conda-forge libhwloc 2.9.3 default_h554bfaf_1009 conda-forge libiconv 1.17 h166bdaf_0 conda-forge libidn2 2.3.4 h166bdaf_0 conda-forge libjpeg-turbo 2.1.5.1 hd590300_1 conda-forge liblapack 3.9.0 18_linux64_openblas conda-forge liblapacke 3.9.0 18_linux64_openblas conda-forge libllvm14 14.0.6 hcd5def8_4 conda-forge libllvm15 15.0.7 h5cf9203_3 conda-forge libmamba 1.5.1 h744094f_0 conda-forge libmambapy 1.5.1 py311hf2555c7_0 conda-forge libnghttp2 1.52.0 h61bc06f_0 conda-forge libnsl 2.0.0 hd590300_1 conda-forge libogg 1.3.4 h7f98852_1 conda-forge libopenblas 0.3.24 pthreads_h413a1c8_0 conda-forge libopencv 4.8.1 py311h643827b_0 conda-forge libopenvino 2023.1.0 h59595ed_0 conda-forge libopenvino-auto-batch-plugin 2023.1.0 h59595ed_0 conda-forge libopenvino-auto-plugin 2023.1.0 h59595ed_0 conda-forge libopenvino-hetero-plugin 2023.1.0 h59595ed_0 conda-forge libopenvino-intel-cpu-plugin 2023.1.0 h59595ed_0 conda-forge libopenvino-intel-gpu-plugin 2023.1.0 h59595ed_0 conda-forge libopenvino-ir-frontend 2023.1.0 h59595ed_0 conda-forge libopenvino-onnx-frontend 2023.1.0 h59595ed_0 conda-forge libopenvino-paddle-frontend 2023.1.0 h59595ed_0 conda-forge libopenvino-pytorch-frontend 2023.1.0 h59595ed_0 conda-forge libopenvino-tensorflow-frontend 2023.1.0 h59595ed_0 conda-forge libopenvino-tensorflow-lite-frontend 2023.1.0 h59595ed_0 conda-forge libopus 1.3.1 h7f98852_1 conda-forge libpciaccess 0.17 h166bdaf_0 conda-forge libpng 1.6.39 h753d276_0 conda-forge libpq 15.4 hfc447b1_1 conda-forge libprotobuf 4.23.4 hf27288f_6 conda-forge libsndfile 1.2.2 hc60ed4a_1 conda-forge libsodium 1.0.18 h36c2ea0_1 conda-forge libsolv 0.7.24 hfc55251_4 conda-forge libsqlite 3.43.0 h2797004_0 conda-forge libssh2 1.11.0 h0841786_0 conda-forge libstdcxx-ng 13.2.0 h7e041cc_2 conda-forge libsystemd0 254 h3516f8a_0 conda-forge libtasn1 4.19.0 h166bdaf_0 conda-forge libtiff 4.6.0 h29866fb_1 conda-forge libunistring 0.9.10 h7f98852_0 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libva 2.20.0 hd590300_0 conda-forge libvorbis 1.3.7 h9c3ff4c_0 conda-forge libvpx 1.13.0 hcb278e6_0 conda-forge libwebp-base 1.3.2 hd590300_0 conda-forge libxcb 1.15 h0b41bf4_0 conda-forge libxkbcommon 1.5.0 h5d7e998_3 conda-forge libxml2 2.11.5 h232c23b_1 conda-forge libzlib 1.2.13 hd590300_5 conda-forge libzopfli 1.0.3 h9c3ff4c_0 conda-forge llvmlite 0.40.1 py311ha6695c7_0 conda-forge lmfit 1.2.2 pyhd8ed1ab_1 conda-forge looseversion 1.3.0 pyhd8ed1ab_0 conda-forge lz4-c 1.9.4 hcb278e6_0 conda-forge lzo 2.10 h516909a_1000 conda-forge markupsafe 2.1.3 py311h459d7ec_1 conda-forge mat73 0.62 pyhd8ed1ab_0 conda-forge matplotlib 3.8.0 py311h38be061_1 conda-forge matplotlib-base 3.8.0 py311h54ef318_1 conda-forge matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge mistune 3.0.1 pyhd8ed1ab_0 conda-forge ml-dtypes 0.3.1 pypi_0 pypi mpg123 1.32.1 h59595ed_0 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge mysql-common 8.0.33 hf1915f5_4 conda-forge mysql-libs 8.0.33 hca2cd23_4 conda-forge nbclient 0.8.0 pyhd8ed1ab_0 conda-forge nbconvert-core 7.8.0 pyhd8ed1ab_0 conda-forge nbformat 5.9.2 pyhd8ed1ab_0 conda-forge ncurses 6.4 hcb278e6_0 conda-forge nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge nettle 3.8.1 hc379101_1 conda-forge networkx 3.1 pyhd8ed1ab_0 conda-forge nomkl 1.0 h5ca1d4c_0 conda-forge notebook-shim 0.2.3 pyhd8ed1ab_0 conda-forge nspr 4.35 h27087fc_0 conda-forge nss 3.92 h1d7d5a4_0 conda-forge numba 0.57.1 py311h96b013e_0 conda-forge numexpr 2.8.7 py311h320fe9a_100 conda-forge numpy 1.24.4 py311h64a7726_0 conda-forge nvidia-cublas-cu12 12.2.5.6 pypi_0 pypi nvidia-cuda-cupti-cu12 12.2.142 pypi_0 pypi nvidia-cuda-nvcc-cu12 12.2.140 pypi_0 pypi nvidia-cuda-nvrtc-cu12 12.2.140 pypi_0 pypi nvidia-cuda-runtime-cu12 12.2.140 pypi_0 pypi nvidia-cudnn-cu12 8.9.4.25 pypi_0 pypi nvidia-cufft-cu12 11.0.8.103 pypi_0 pypi nvidia-cusolver-cu12 11.5.2.141 pypi_0 pypi nvidia-cusparse-cu12 12.1.2.141 pypi_0 pypi nvidia-nvjitlink-cu12 12.2.140 pypi_0 pypi ocl-icd 2.3.1 h7f98852_0 conda-forge ocl-icd-system 1.0.0 1 conda-forge opencv 4.8.1 py311h38be061_0 conda-forge opencv-python-headless 4.8.1.78 pypi_0 pypi openh264 2.3.1 hcb278e6_2 conda-forge openjpeg 2.5.0 h488ebb8_3 conda-forge openssl 3.3.1 h4bc722e_2 conda-forge opt-einsum 3.3.0 pypi_0 pypi overrides 7.4.0 pyhd8ed1ab_0 conda-forge p11-kit 0.24.1 hc5aa10d_0 conda-forge packaging 23.1 pyhd8ed1ab_0 conda-forge pandas 2.1.1 py311h320fe9a_0 conda-forge pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge parso 0.8.3 pyhd8ed1ab_0 conda-forge patsy 0.5.6 pyhd8ed1ab_0 conda-forge pcre2 10.40 hc3806b6_0 conda-forge pexpect 4.8.0 pyh1a96a4e_2 conda-forge pickleshare 0.7.5 py_1003 conda-forge pillow 10.0.1 py311h8aef010_1 conda-forge pims 0.6.1 pyhd8ed1ab_1 conda-forge pip 23.2.1 pyhd8ed1ab_0 conda-forge pixman 0.42.2 h59595ed_0 conda-forge pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge platformdirs 3.10.0 pyhd8ed1ab_0 conda-forge plotly 5.17.0 pyhd8ed1ab_0 conda-forge pluggy 1.3.0 pyhd8ed1ab_0 conda-forge ply 3.11 py_1 conda-forge prometheus_client 0.17.1 pyhd8ed1ab_0 conda-forge prompt-toolkit 3.0.39 pyha770c72_0 conda-forge prompt_toolkit 3.0.39 hd8ed1ab_0 conda-forge psutil 5.9.5 py311h459d7ec_1 conda-forge pthread-stubs 0.4 h36c2ea0_1001 conda-forge ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge pugixml 1.13 h59595ed_1 conda-forge pulseaudio-client 16.1 hb77b528_5 conda-forge pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge py-cpuinfo 9.0.0 pyhd8ed1ab_0 conda-forge py-opencv 4.8.1 py311h781c19f_0 conda-forge pybind11-abi 4 hd8ed1ab_3 conda-forge pycosat 0.6.4 py311h459d7ec_2 conda-forge pycparser 2.21 pyhd8ed1ab_0 conda-forge pygments 2.16.1 pyhd8ed1ab_0 conda-forge pyopenssl 23.2.0 pyhd8ed1ab_1 conda-forge pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge pyqt 5.15.9 py311hf0fb5b6_5 conda-forge pyqt5-sip 12.12.2 py311hb755f60_5 conda-forge pysocks 1.7.1 pyha2e5f31_6 conda-forge pytables 3.8.0 py311h10c7f7f_3 conda-forge python 3.11.5 hab00c5b_0_cpython conda-forge python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge python-fastjsonschema 2.18.0 pyhd8ed1ab_0 conda-forge python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge python-tzdata 2023.3 pyhd8ed1ab_0 conda-forge python_abi 3.11 4_cp311 conda-forge pytz 2023.3.post1 pyhd8ed1ab_0 conda-forge pywavelets 1.4.1 py311h1f0f07a_1 conda-forge pyyaml 6.0.1 py311h459d7ec_1 conda-forge pyzmq 25.1.1 py311h75c88c4_1 conda-forge qt-main 5.15.8 hc47bfe8_16 conda-forge rav1e 0.6.6 he8a937b_2 conda-forge readline 8.2 h8228510_1 conda-forge referencing 0.30.2 pyhd8ed1ab_0 conda-forge reproc 14.2.4 h0b41bf4_0 conda-forge reproc-cpp 14.2.4 hcb278e6_0 conda-forge requests 2.31.0 pyhd8ed1ab_0 conda-forge retrying 1.3.4 pypi_0 pypi rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge rpds-py 0.10.3 py311h46250e7_0 conda-forge ruamel.yaml 0.17.32 py311h459d7ec_0 conda-forge ruamel.yaml.clib 0.2.7 py311h2582759_1 conda-forge ruptures 1.1.9 pypi_0 pypi scikit-image 0.21.0 py311hb755f60_0 conda-forge scikit-learn 1.5.1 py311hd632256_0 conda-forge scipy 1.11.2 py311h64a7726_1 conda-forge sdt-python 18.1 pyh1a96a4e_0 conda-forge seaborn 0.13.1 hd8ed1ab_0 conda-forge seaborn-base 0.13.1 pyhd8ed1ab_0 conda-forge send2trash 1.8.2 pyh41d4057_0 conda-forge setuptools 68.2.2 pyhd8ed1ab_0 conda-forge setuptools-scm 8.0.3 pyhd8ed1ab_0 conda-forge sip 6.7.11 py311hb755f60_1 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge slicerator 1.1.0 pyhd8ed1ab_0 conda-forge snappy 1.1.10 h9fff704_0 conda-forge sniffio 1.3.0 pyhd8ed1ab_0 conda-forge soupsieve 2.5 pyhd8ed1ab_1 conda-forge stack_data 0.6.2 pyhd8ed1ab_0 conda-forge statsmodels 0.14.1 py311h1f0f07a_0 conda-forge svt-av1 1.7.0 h59595ed_0 conda-forge tbb 2021.10.0 h00ab1b0_1 conda-forge tenacity 8.2.3 pyhd8ed1ab_0 conda-forge terminado 0.17.1 pyh41d4057_0 conda-forge threadpoolctl 3.2.0 pyha21a80b_0 conda-forge tifffile 2023.9.26 pyhd8ed1ab_0 conda-forge tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge tk 8.6.13 h2797004_0 conda-forge toml 0.10.2 pyhd8ed1ab_0 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge toolz 0.12.0 pyhd8ed1ab_0 conda-forge tornado 6.3.3 py311h459d7ec_1 conda-forge tqdm 4.66.1 pyhd8ed1ab_0 conda-forge trackpy 0.6.1 pyhd8ed1ab_0 conda-forge traitlets 5.10.1 pyhd8ed1ab_0 conda-forge truststore 0.8.0 pyhd8ed1ab_0 conda-forge typing-extensions 4.8.0 hd8ed1ab_0 conda-forge typing_extensions 4.8.0 pyha770c72_0 conda-forge typing_utils 0.1.0 pyhd8ed1ab_0 conda-forge tzdata 2023c h71feb2d_0 conda-forge uncertainties 3.1.7 pyhd8ed1ab_0 conda-forge uri-template 1.3.0 pyhd8ed1ab_0 conda-forge urllib3 2.0.5 pyhd8ed1ab_0 conda-forge wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge webcolors 1.13 pyhd8ed1ab_0 conda-forge webencodings 0.5.1 pyhd8ed1ab_2 conda-forge websocket-client 1.6.3 pyhd8ed1ab_0 conda-forge werkzeug 3.0.3 pypi_0 pypi wheel 0.41.2 pyhd8ed1ab_0 conda-forge widgetsnbextension 4.0.9 pyhd8ed1ab_0 conda-forge x264 1!164.3095 h166bdaf_2 conda-forge x265 3.5 h924138e_3 conda-forge xcb-util 0.4.0 hd590300_1 conda-forge xcb-util-image 0.4.0 h8ee46fc_1 conda-forge xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge xcb-util-renderutil 0.3.9 hd590300_1 conda-forge xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge xkeyboard-config 2.39 hd590300_0 conda-forge xorg-fixesproto 5.0 h7f98852_1002 conda-forge xorg-inputproto 2.3.2 h7f98852_1002 conda-forge xorg-kbproto 1.0.7 h7f98852_1002 conda-forge xorg-libice 1.1.1 hd590300_0 conda-forge xorg-libsm 1.2.4 h7391055_0 conda-forge xorg-libx11 1.8.6 h8ee46fc_0 conda-forge xorg-libxau 1.0.11 hd590300_0 conda-forge xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge xorg-libxext 1.3.4 h0b41bf4_2 conda-forge xorg-libxfixes 5.0.3 h7f98852_1004 conda-forge xorg-libxi 1.7.10 h7f98852_0 conda-forge xorg-libxrender 0.9.11 hd590300_0 conda-forge xorg-renderproto 0.11.1 h7f98852_1002 conda-forge xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge xorg-xproto 7.0.31 h7f98852_1007 conda-forge xz 5.2.6 h166bdaf_0 conda-forge yaml 0.2.5 h7f98852_2 conda-forge yaml-cpp 0.7.0 h59595ed_3 conda-forge zeromq 4.3.4 h9c3ff4c_1 conda-forge zfp 1.0.0 h27087fc_3 conda-forge zipp 3.17.0 pyhd8ed1ab_0 conda-forge zlib 1.2.13 hd590300_5 conda-forge zlib-ng 2.0.7 h0b41bf4_0 conda-forge zstandard 0.21.0 py311haa97af0_1 conda-forge zstd 1.5.5 hfc55251_0 conda-forge For the analysis of the cross-section profiles: Python 3.9.13 with the following Python packages: # Name Version Build Channel alabaster 0.7.12 pyhd3eb1b0_0 anyio 3.7.0 pypi_0 pypi appdirs 1.4.4 pyhd3eb1b0_0 appnope 0.1.2 py39hecd8cb5_1001 argon2-cffi 21.3.0 pyhd3eb1b0_0 argon2-cffi-bindings 21.2.0 py39hca72f7f_0 arrow 1.2.3 pypi_0 pypi asciitree 0.3.3 py_2 asteval 0.9.27 pyhd8ed1ab_0 conda-forge astroid 2.11.7 pypi_0 pypi asttokens 2.0.5 pyhd3eb1b0_0 async-lru 2.0.2 pypi_0 pypi attrs 21.4.0 pyhd3eb1b0_0 autopep8 1.6.0 pyhd3eb1b0_1 babel 2.12.1 pypi_0 pypi backcall 0.2.0 pyhd3eb1b0_0 beautifulsoup4 4.11.1 py39hecd8cb5_0 blas 1.0 openblas bleach 4.1.0 pyhd3eb1b0_0 blosc 1.21.0 h8346a28_1 bokeh 2.4.3 py39hecd8cb5_0 bottleneck 1.3.5 py39h67323c0_0 brotli 1.0.9 hca72f7f_7 brotli-bin 1.0.9 hca72f7f_7 brotlipy 0.7.0 py39h9ed2024_1003 brunsli 0.1 h23ab428_0 bs4 4.11.1 hd3eb1b0_0 bzip2 1.0.8 h1de35cc_0 c-ares 1.18.1 hca72f7f_0 ca-certificates 2023.12.12 hecd8cb5_0 cachetools 5.3.1 pypi_0 pypi cachey 0.2.1 pyh9f0ad1d_0 conda-forge cairo 1.16.0 h691a603_2 certifi 2023.11.17 py39hecd8cb5_0 cffi 1.15.1 py39hc55c11b_0 cfitsio 3.470 hbd21bf8_7 charls 2.2.0 h23ab428_0 charset-normalizer 2.0.4 pyhd3eb1b0_0 click 8.0.4 py39hecd8cb5_0 cloudpickle 2.0.0 pyhd3eb1b0_0 colorama 0.4.5 py39hecd8cb5_0 conda 22.9.0 py39hecd8cb5_0 conda-package-handling 1.9.0 py39hca72f7f_0 coverage 7.3.2 pypi_0 pypi cryptography 37.0.1 py39hf6deb26_0 cycler 0.11.0 pyhd3eb1b0_0 cytoolz 0.11.0 py39h9ed2024_0 dask 2022.2.1 pyhd3eb1b0_0 dask-core 2022.2.1 pyhd3eb1b0_0 debugpy 1.5.1 py39he9d5cce_0 decorator 5.1.1 pyhd3eb1b0_0 defusedxml 0.7.1 pyhd3eb1b0_0 dill 0.3.5.1 pypi_0 pypi distributed 2022.2.1 pyhd3eb1b0_0 docstring_parser 0.13 pyhd8ed1ab_0 conda-forge docutils 0.18.1 py39hecd8cb5_3 droppy 1.0.0b0 pypi_0 pypi eigen 3.3.7 haf03e11_1 entrypoints 0.4 py39hecd8cb5_0 et-xmlfile 1.1.0 pypi_0 pypi exceptiongroup 1.1.1 pypi_0 pypi executing 0.8.3 pyhd3eb1b0_0 fasteners 0.16.3 pyhd3eb1b0_0 fftw 3.3.9 h9ed2024_1 fontconfig 2.13.1 ha9ee91d_0 fonttools 4.25.0 pyhd3eb1b0_0 fqdn 1.5.1 pypi_0 pypi freetype 2.11.0 hd8bbffd_0 freetype-py 2.2.0 pyhd3eb1b0_0 fsspec 2022.7.1 py39hecd8cb5_0 future 0.18.2 py39hecd8cb5_1 gettext 0.21.0 h7535e17_0 giflib 5.2.1 haf1e3a3_0 glib 2.69.1 h8346a28_1 gmp 6.2.1 he9d5cce_3 gmpy2 2.1.2 py39hd5de756_0 google-api-core 2.11.1 pypi_0 pypi google-api-python-client 2.92.0 pypi_0 pypi google-auth 2.21.0 pypi_0 pypi google-auth-httplib2 0.1.0 pypi_0 pypi google-auth-oauthlib 1.0.0 pypi_0 pypi googleapis-common-protos 1.59.1 pypi_0 pypi graphite2 1.3.14 he9d5cce_1 gst-plugins-base 1.14.0 h4180768_2 gstreamer 1.14.0 h0fc69c2_2 harfbuzz 4.3.0 h3f129a2_0 hdf5 1.10.6 h10fe05b_1 heapdict 1.0.1 pyhd3eb1b0_0 hsluv 5.0.2 pyhd3eb1b0_0 httplib2 0.22.0 pypi_0 pypi icu 58.2 h0a44026_3 idna 3.3 pyhd3eb1b0_0 imagecodecs 2021.8.26 py39h0f85e6e_1 imageio 2.22.2 pypi_0 pypi imageio-ffmpeg 0.4.9 pypi_0 pypi imagesize 1.4.1 py39hecd8cb5_0 importlib-metadata 7.0.0 pypi_0 pypi imreg_dft 2.0.0 py39h6e9494a_1005 conda-forge iniconfig 2.0.0 pypi_0 pypi install 1.3.5 pypi_0 pypi ipykernel 6.15.2 py39hecd8cb5_0 ipympl 0.8.7 pyhd3eb1b0_0 ipython 8.4.0 py39hecd8cb5_0 ipython_genutils 0.2.0 pyhd3eb1b0_1 ipywidgets 7.6.5 pyhd3eb1b0_1 isoduration 20.11.0 pypi_0 pypi isort 5.10.1 pypi_0 pypi jaraco-classes 3.3.0 pypi_0 pypi jedi 0.18.1 py39hecd8cb5_1 jinja2 3.0.3 pyhd3eb1b0_0 joblib 1.1.0 pyhd3eb1b0_0 jpeg 9e hca72f7f_0 json5 0.9.14 pypi_0 pypi jsonpointer 2.4 pypi_0 pypi jsonschema 4.17.3 pypi_0 pypi jupyter-client 8.2.0 pypi_0 pypi jupyter-core 5.3.1 pypi_0 pypi jupyter-events 0.6.3 pypi_0 pypi jupyter-lsp 2.2.0 pypi_0 pypi jupyter-nbextensions-configurator 0.5.0 pypi_0 pypi jupyter-server 2.6.0 pypi_0 pypi jupyter-server-terminals 0.4.4 pypi_0 pypi jupyter_contrib_core 0.4.0 pyhd8ed1ab_0 conda-forge jupyter_contrib_nbextensions 0.5.1 pyhd8ed1ab_2 conda-forge jupyter_highlight_selected_word 0.2.0 py39h6e9494a_1005 conda-forge jupyter_latex_envs 1.4.6 pyhd8ed1ab_1002 conda-forge jupyter_nbextensions_configurator 0.4.1 py39h6e9494a_2 conda-forge jupyterlab 4.0.2 pypi_0 pypi jupyterlab-server 2.23.0 pypi_0 pypi jupyterlab_pygments 0.1.2 py_0 jupyterlab_widgets 1.0.0 pyhd3eb1b0_1 jupyterthemes 0.20.0 py_1 conda-forge jxrlib 1.1 haf1e3a3_2 keyring 24.3.0 pypi_0 pypi kiwisolver 1.4.2 py39he9d5cce_0 krb5 1.19.2 hcd88c3b_0 lazy-object-proxy 1.7.1 pypi_0 pypi lcms2 2.12 hf1fd2bf_0 lerc 3.0 he9d5cce_0 lesscpy 0.15.1 pyhd8ed1ab_0 conda-forge libaec 1.0.4 hb1e8313_1 libbrotlicommon 1.0.9 hca72f7f_7 libbrotlidec 1.0.9 hca72f7f_7 libbrotlienc 1.0.9 hca72f7f_7 libclang 12.0.0 default_hbc2896b_2 libcurl 7.84.0 h6dfd666_0 libcxx 14.0.6 h9765a3e_0 libdeflate 1.8 h9ed2024_5 libedit 3.1.20210910 hca72f7f_0 libev 4.33 h9ed2024_1 libffi 3.3 hb1e8313_2 libflac 1.3.4 h96cf925_0 conda-forge libgfortran 5.0.0 11_2_0_h246ff09_26 libgfortran5 11.2.0 h246ff09_26 libiconv 1.16 hca72f7f_2 libllvm11 11.1.0 h46f1229_5 libllvm12 12.0.0 h9b2ccf5_3 libnghttp2 1.46.0 ha29bfda_0 libogg 1.3.5 hca72f7f_1 libopenblas 0.3.20 h9a5756b_1 libopus 1.3.1 h1de35cc_0 libpng 1.6.37 ha441bb4_0 libpq 12.9 h1c9f633_3 libsndfile 1.0.31 he49afe7_1 conda-forge libsodium 1.0.18 h1de35cc_0 libssh2 1.10.0 h0a4fc7d_0 libtiff 4.4.0 h2ef1027_0 libvorbis 1.3.7 haf1e3a3_0 libwebp 1.2.2 h56c3ce4_0 libwebp-base 1.2.2 hca72f7f_0 libxml2 2.9.14 hbf8cd5e_0 libxslt 1.1.35 h5b33f42_0 libzopfli 1.0.3 hb1e8313_0 llvm-openmp 14.0.6 h0dcd299_0 llvmlite 0.38.0 py39h8346a28_0 lmfit 1.0.3 pyhd8ed1ab_0 conda-forge locket 1.0.0 py39hecd8cb5_0 lxml 4.9.1 py39h65b224f_0 lz4-c 1.9.3 h23ab428_1 lzo 2.10 haf1e3a3_2 magicgui 0.6.0 pyhd8ed1ab_0 conda-forge markdown-it-py 3.0.0 pypi_0 pypi markupsafe 2.1.1 py39hca72f7f_0 matplotlib-base 3.5.2 py39hfb0c5b7_0 matplotlib-inline 0.1.6 py39hecd8cb5_0 mccabe 0.7.0 pypi_0 pypi mdurl 0.1.2 pypi_0 pypi mistune 0.8.4 py39h9ed2024_1000 mock 4.0.3 pyhd3eb1b0_0 more-itertools 10.1.0 pypi_0 pypi mpc 1.1.0 h6ef4df4_1 mpfr 4.0.2 h9066e36_1 mpmath 1.2.1 pypi_0 pypi msgpack-python 1.0.3 py39haf03e11_0 munkres 1.1.4 py_0 napari 0.4.12 pyhd8ed1ab_0 conda-forge napari-console 0.0.6 pyhd8ed1ab_0 conda-forge napari-plugin-engine 0.2.0 pyhd8ed1ab_2 conda-forge napari-skimage-regionprops 0.5.5 pyhd8ed1ab_0 conda-forge napari-svg 0.1.6 pyhd8ed1ab_0 conda-forge napari-tools-menu 0.1.17 pyhd8ed1ab_0 conda-forge napari-workflows 0.2.6 pyhd8ed1ab_0 conda-forge nbclient 0.5.13 py39hecd8cb5_0 nbconvert 6.4.4 py39hecd8cb5_0 nbformat 5.5.0 py39hecd8cb5_0 ncurses 6.3 hca72f7f_3 nest-asyncio 1.5.5 py39hecd8cb5_0 networkx 2.8.7 pypi_0 pypi nh3 0.2.14 pypi_0 pypi notebook 6.4.12 py39hecd8cb5_0 notebook-shim 0.2.3 pypi_0 pypi nspr 4.33 he9d5cce_0 nss 3.74 h47edf6a_0 numba 0.55.1 py39hae1ba45_0 numcodecs 0.9.1 py39he9d5cce_0 numexpr 2.8.3 py39h0f1bd0b_0 numpy 1.21.5 py39h0f1bd0b_3 numpy-base 1.21.5 py39hbda7086_3 numpy-stl 2.17.1 pypi_0 pypi numpydoc 1.4.0 py39hecd8cb5_0 oauthlib 3.2.2 pypi_0 pypi opencv 4.6.0 py39h0e6eb04_2 openjpeg 2.4.0 h66ea3da_0 openpyxl 3.0.10 pypi_0 pypi openssl 1.1.1w hca72f7f_0 overrides 7.3.1 pypi_0 pypi packaging 21.3 pyhd3eb1b0_0 pandas 1.4.4 py39he9d5cce_0 pandocfilters 1.5.0 pyhd3eb1b0_0 parso 0.8.3 pyhd3eb1b0_0 partd 1.2.0 pyhd3eb1b0_1 pcre 8.45 h23ab428_0 pexpect 4.8.0 pyhd3eb1b0_3 pickleshare 0.7.5 pyhd3eb1b0_1003 pillow 9.2.0 py39hde71d04_1 pims 0.5 pyhd3eb1b0_1 pint 0.20.1 pyhd8ed1ab_0 conda-forge pip 22.2.2 py39hecd8cb5_0 pixman 0.40.0 h9ed2024_1 pkginfo 1.9.6 pypi_0 pypi platformdirs 2.5.2 pypi_0 pypi pluggy 1.3.0 pypi_0 pypi ply 3.11 py39hecd8cb5_0 prometheus_client 0.14.1 py39hecd8cb5_0 prompt-toolkit 3.0.20 pyhd3eb1b0_0 protobuf 4.23.4 pypi_0 pypi psutil 5.9.0 py39hca72f7f_0 psygnal 0.5.0 py39h92daf61_0 conda-forge ptyprocess 0.7.0 pyhd3eb1b0_2 pure_eval 0.2.2 pyhd3eb1b0_0 pyasn1 0.5.0 pypi_0 pypi pyasn1-modules 0.3.0 pypi_0 pypi pycifrw 4.4.3 pypi_0 pypi pycodestyle 2.8.0 pyhd3eb1b0_0 pycosat 0.6.3 py39h9ed2024_0 pycparser 2.21 pyhd3eb1b0_0 pydantic 1.9.0 py39hca72f7f_1 pygments 2.17.2 pypi_0 pypi pylint 2.14.5 pypi_0 pypi pyopengl 3.1.1a1 py39hecd8cb5_0 pyopenssl 22.0.0 pyhd3eb1b0_0 pyparsing 3.0.9 py39hecd8cb5_0 pypdf2 2.11.1 pypi_0 pypi pyqt 5.15.7 py39he9d5cce_0 pyqt5 5.15.10 pypi_0 pypi pyqt5-qt5 5.15.11 pypi_0 pypi pyqt5-sip 12.13.0 pypi_0 pypi pyrsistent 0.18.0 py39hca72f7f_0 pysocks 1.7.1 py39hecd8cb5_0 pysoundfile 0.11.0 pyhd8ed1ab_0 conda-forge pytables 3.6.1 py39h648f197_1 pytest 7.4.3 pypi_0 pypi pytest-cov 4.1.0 pypi_0 pypi pytest-subtests 0.11.0 pypi_0 pypi python 3.9.13 hdfd78df_1 python-dateutil 2.8.2 pyhd3eb1b0_0 python-fastjsonschema 2.16.2 py39hecd8cb5_0 python-json-logger 2.0.7 pypi_0 pypi python-utils 3.4.5 pypi_0 pypi python.app 3 py39hca72f7f_0 python_abi 3.9 2_cp39 conda-forge pytz 2022.1 py39hecd8cb5_0 pywavelets 1.3.0 py39hca72f7f_0 pywget 3.2 py39hecd8cb5_0 pyyaml 6.0 py39hca72f7f_1 pyzmq 25.1.0 pypi_0 pypi qt-main 5.15.2 h719ae48_7 qt-webengine 5.15.9 h90a370e_4 qtconsole-base 5.3.2 pyha770c72_0 conda-forge qtpy 2.2.0 py39hecd8cb5_0 qtwebkit 5.212 h24dc246_4 rdp 0.8 pyhd8ed1ab_0 conda-forge readline 8.1.2 hca72f7f_1 readme-renderer 42.0 pypi_0 pypi requests 2.28.1 py39hecd8cb5_0 requests-oauthlib 1.3.1 pypi_0 pypi requests-toolbelt 1.0.0 pypi_0 pypi rfc3339-validator 0.1.4 pypi_0 pypi rfc3986 2.0.0 pypi_0 pypi rfc3986-validator 0.1.1 pypi_0 pypi rich 13.7.0 pypi_0 pypi rsa 4.9 pypi_0 pypi ruamel_yaml 0.15.100 py39h9ed2024_0 scikit-image 0.19.3 pypi_0 pypi scikit-learn 1.1.1 py39he9d5cce_0 scipy 1.7.3 py39h0ed0bf1_2 sdt-python 17.2 pyh6c4a22f_0 conda-forge seaborn 0.12.1 pypi_0 pypi send2trash 1.8.0 pyhd3eb1b0_1 setuptools 63.4.1 py39hecd8cb5_0 setuptools-scm 7.0.4 py39hecd8cb5_0 sip 6.6.2 py39he9d5cce_0 six 1.16.0 pyhd3eb1b0_1 slicerator 1.0.0 pyhd3eb1b0_0 snappy 1.1.9 he9d5cce_0 sniffio 1.3.0 pypi_0 pypi snowballstemmer 2.2.0 pyhd3eb1b0_0 sortedcontainers 2.4.0 pyhd3eb1b0_0 soupsieve 2.3.1 pyhd3eb1b0_0 sphinx 5.0.2 py39hecd8cb5_0 sphinxcontrib-applehelp 1.0.2 pyhd3eb1b0_0 sphinxcontrib-devhelp 1.0.2 pyhd3eb1b0_0 sphinxcontrib-htmlhelp 2.0.0 pyhd3eb1b0_0 sphinxcontrib-jsmath 1.0.1 pyhd3eb1b0_0 sphinxcontrib-qthelp 1.0.3 pyhd3eb1b0_0 sphinxcontrib-serializinghtml 1.1.5 pyhd3eb1b0_0 sqlite 3.39.3 h707629a_0 stack_data 0.2.0 pyhd3eb1b0_0 superqt 0.3.8 pyhd8ed1ab_0 conda-forge sympy 1.11.1 pypi_0 pypi tbb 2021.5.0 haf03e11_0 tblib 1.7.0 pyhd3eb1b0_0 terminado 0.13.1 py39hecd8cb5_0 testpath 0.6.0 py39hecd8cb5_0 threadpoolctl 2.2.0 pyh0d69192_0 tifffile 2021.7.2 pyhd3eb1b0_2 tk 8.6.12 h5d9f67b_0 toml 0.10.2 pyhd3eb1b0_0 tomli 2.0.1 py39hecd8cb5_0 tomlkit 0.11.2 pypi_0 pypi toolz 0.11.2 pyhd3eb1b0_0 tornado 6.2 py39hca72f7f_0 tqdm 4.64.1 py39hecd8cb5_0 trackpy 0.5.0 pyhd8ed1ab_0 conda-forge traitlets 5.9.0 pypi_0 pypi twine 4.0.2 pypi_0 pypi typing-extensions 4.3.0 py39hecd8cb5_0 typing_extensions 4.3.0 py39hecd8cb5_0 tzdata 2022c h04d1e81_0 uncertainties 3.1.7 pyhd8ed1ab_0 conda-forge uri-template 1.3.0 pypi_0 pypi uritemplate 4.1.1 pypi_0 pypi urllib3 1.26.11 py39hecd8cb5_0 vispy 0.7.3 py39h01521a8_0 wcwidth 0.2.5 pyhd3eb1b0_0 webcolors 1.13 pypi_0 pypi webencodings 0.5.1 py39hecd8cb5_1 websocket-client 1.6.0 pypi_0 pypi wget 3.2 pypi_0 pypi wheel 0.37.1 pyhd3eb1b0_0 widgetsnbextension 3.5.2 py39hecd8cb5_0 wrapt 1.14.1 py39hca72f7f_0 xz 5.2.6 hca72f7f_0 yaml 0.2.5 haf1e3a3_0 zarr 2.8.1 pyhd3eb1b0_0 zeromq 4.3.4 h23ab428_0 zfp 0.5.5 he9d5cce_6 zict 2.1.0 py39hecd8cb5_0 zipp 3.8.0 py39hecd8cb5_0 zlib 1.2.12 h4dc903c_3 zstd 1.5.2 hcb37349_0